1 Response_reg#1
20-120 aa · 101 aa · 40.4% of protein
Raw token
Response_reg:20:9.86e-20:120:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN85_RS02895
Response regulator LytTR family
Bifidobacterium pseudocatenulatum · GCF_028312105
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028312105#PMN85_RS02895Stable P2CS identifier used across views.
GenomeGCF_028312105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 250 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
151-242 aa · 92 aa · 36.8% of protein
Raw token
LytTR:151:8.72e-20:242:97:98- Raw architecture: Response_reg:20:9.86e-20:120:106:111#LytTR:151:8.72e-20:242:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028312105::NZ_JAQKRZ010000020.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9937-10689Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN85_02890RefSeq proteinWP_004220970.1
Context group ID
GCF_028312105::NZ_JAQKRZ010000020.1::G00014Context members
PMN85_RS02895
Partner locus tags
PMN85_RS02895
Partner old locus tags
PMN85_02890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004220970.1Primary protein accession used for annex mappings.
UniProt accessionC0BRD2Primary UniProt accession resolved in the annex database.
UniProt IDC0BRD2_BIFPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN85_RS02895Primary locus identifier stored in the genes table.
Old locus tagPMN85_02890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRZ010000020.1Sequence record reported by the local genomic context database.
Genomic interval9 937-10 689 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 937-10 689 ntGCF_028312105::NZ_JAQKRZ010000020.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028312105::NZ_JAQKRZ010000020.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRZ010000020.1All displayed genes belong to this local TCS context.
Neighborhood span9 937-10 689 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 937 nt10 689 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMN85_RS02895GCF_028312105#PMN85_RS02895
RRLytTRCurrent focus
9 937-10 689 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS03925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0722021
Simplified PFAM architecture for RROC_0722021
PFAM domain coverage: 192 / 250 aa (76.8%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-121] | LytTR[154-242]
- Domain count: 2
- Matched identifier: RROC_0722021
- Positioned domains: Response_reg 19-121 ; Response_reg 19-121 ; LytTR 154-242 ; LytTR 154-242
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS03925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028312105
AssemblyASM2831210v1 · Contighaploid
Genome composition2 223 550 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key