1 Response_reg#1
5-103 aa · 99 aa · 45.2% of protein
Raw token
Response_reg:5:2.74e-24:103:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMM77_RS06215
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_028310485
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028310485#PMM77_RS06215Stable P2CS identifier used across views.
GenomeGCF_028310485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 219 aa (70.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:2.95e-21:213:56:58- Raw architecture: Response_reg:5:2.74e-24:103:99:111#HTH_LUXR:158:2.95e-21:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028310485::NZ_JAQKRQ010000003.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span246014-248022Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMM77_06215RefSeq proteinWP_195220102.1
Context group ID
GCF_028310485::NZ_JAQKRQ010000003.1::G00011Context members
PMM77_RS06210PMM77_RS06215
Partner locus tags
PMM77_RS06210PMM77_RS06215
Partner old locus tags
PMM77_06210PMM77_06215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195220102.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMM77_RS06215Primary locus identifier stored in the genes table.
Old locus tagPMM77_06215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRQ010000003.1Sequence record reported by the local genomic context database.
Genomic interval247 363-248 022 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span246 014-248 022 ntGCF_028310485::NZ_JAQKRQ010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310485::NZ_JAQKRQ010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRQ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span246 014-248 022 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
246 014 nt248 022 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMM77_RS06210GCF_028310485#PMM77_RS06210
HKClassic
246 014-247 363 nt · Forward (+)
PMM77_RS06215GCF_028310485#PMM77_RS06215
RRNarLCurrent focus
247 363-248 022 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549915#I1927_RS03095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1784646
Simplified PFAM architecture for RROC_1784646
PFAM domain coverage: 155 / 219 aa (70.8%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1784646
- Positioned domains: Response_reg 4-104 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_015549915#I1927_RS03095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310485
AssemblyASM2831048v1 · Scaffoldhaploid
Genome composition2 244 904 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key