1 Response_reg#1
6-99 aa · 94 aa · 43.7% of protein
Raw token
Response_reg:6:6.73e-26:99:94:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMM77_RS02820
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_028310485
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028310485#PMM77_RS02820Stable P2CS identifier used across views.
GenomeGCF_028310485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 215 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
133-209 aa · 77 aa · 35.8% of protein
Raw token
Trans_reg_C:133:1.83e-28:209:78:77- Raw architecture: Response_reg:6:6.73e-26:99:94:111#Trans_reg_C:133:1.83e-28:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028310485::NZ_JAQKRQ010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7125-8800Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMM77_02820RefSeq proteinWP_117612162.1
Context group ID
GCF_028310485::NZ_JAQKRQ010000002.1::G00005Context members
PMM77_RS02820PMM77_RS02825
Partner locus tags
PMM77_RS02820PMM77_RS02825
Partner old locus tags
PMM77_02820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117612162.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5HK73Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5HK73_BIFPSDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMM77_RS02820Primary locus identifier stored in the genes table.
Old locus tagPMM77_02820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval7 125-7 772 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 125-8 800 ntGCF_028310485::NZ_JAQKRQ010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310485::NZ_JAQKRQ010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span7 125-8 800 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 125 nt8 800 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMM77_RS02820GCF_028310485#PMM77_RS02820
RROmpRCurrent focus
7 125-7 772 nt · Forward (+)
PMM77_RS02825GCF_028310485#PMM77_RS02825
HKClassic
7 769-8 800 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436955#DXC83_RS04680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913312
Simplified PFAM architecture for RROC_1913312
PFAM domain coverage: 169 / 215 aa (78.6%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-98] | Trans_reg_C[133-208]
- Domain count: 2
- Matched identifier: RROC_1913312
- Positioned domains: Response_reg 6-98 ; Response_reg 6-98 ; Trans_reg_C 133-208 ; Trans_reg_C 133-208
Cluster members and taxonomy
Representative gene: GCF_003436955#DXC83_RS04680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310485
AssemblyASM2831048v1 · Scaffoldhaploid
Genome composition2 244 904 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key