1 HAMP#1
205-274 aa · 70 aa · 12.6% of protein
Raw token
HAMP:205:0.0000000000000346:274:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN70_RS01610
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028310275
ClassHKTypeClassicLength556 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028310275#PMN70_RS01610Stable P2CS identifier used across views.
GenomeGCF_028310275Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length556 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 556 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa556 aa
Domain-by-domain annotation3 items
2 HisKA#2
285-352 aa · 68 aa · 12.2% of protein
Raw token
HisKA:285:0.00000000000000769:352:68:643 HATPase_c#3
399-509 aa · 111 aa · 20.0% of protein
Raw token
HATPase_c:399:5.25e-30:509:111:109- Raw architecture: HAMP:205:0.0000000000000346:274:70:69#HisKA:285:0.00000000000000769:352:68:64#HATPase_c:399:5.25e-30:509:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028310275::NZ_JAQKRA010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span332273-334691Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN70_01610RefSeq proteinWP_226849271.1
Context group ID
GCF_028310275::NZ_JAQKRA010000001.1::G00005Context members
PMN70_RS01610PMN70_RS01615
Partner locus tags
PMN70_RS01610PMN70_RS01615
Partner old locus tags
PMN70_01610PMN70_01615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_226849271.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD4W5H9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD4W5H9_BIFPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN70_RS01610Primary locus identifier stored in the genes table.
Old locus tagPMN70_01610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRA010000001.1Sequence record reported by the local genomic context database.
Genomic interval332 273-333 943 nt1 671 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span332 273-334 691 ntGCF_028310275::NZ_JAQKRA010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310275::NZ_JAQKRA010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span332 273-334 691 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
332 273 nt334 691 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN70_RS01610GCF_028310275#PMN70_RS01610
HKClassicCurrent focus
332 273-333 943 nt · Reverse (-)
PMN70_RS01615GCF_028310275#PMN70_RS01615
RROmpR
334 002-334 691 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685985#BAD09_RS03110Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1265263
Simplified PFAM architecture for HKOC_1265263
PFAM domain coverage: 229 / 558 aa (41.0%)
1 aa558 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[224-275] | HisKA[288-354] | HATPase_c[401-510]
- Domain count: 3
- Matched identifier: HKOC_1265263
- Positioned domains: HAMP 224-275 ; HisKA 288-354 ; HATPase_c 401-510
Cluster members and taxonomy
Representative gene: GCF_001685985#BAD09_RS03110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310275
AssemblyASM2831027v1 · Scaffoldhaploid
Genome composition2 304 461 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 12 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key