1 HisKA#1
45-110 aa · 66 aa · 24.9% of protein
Raw token
HisKA:45:0.000000259:110:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN66_RS06575
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028310175
ClassHKTypeClassicLength265 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028310175#PMN66_RS06575Stable P2CS identifier used across views.
GenomeGCF_028310175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 PMN66_RS06575MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 265 aa (63.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
163-263 aa · 101 aa · 38.1% of protein
Raw token
HATPase_c:163:6.22e-28:263:101:109- Raw architecture: HisKA:45:0.000000259:110:66:64#HATPase_c:163:6.22e-28:263:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028310175::NZ_JAQKRC010000005.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156416-158091Genomic interval covered by the local TCS group.
Context group ID
GCF_028310175::NZ_JAQKRC010000005.1::G00009Context members
PMN66_RS06570PMN66_RS06575
Partner locus tags
PMN66_RS06570PMN66_RS06575
Partner old locus tags
PMN66_06565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN66_RS06575Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQKRC010000005.1Sequence record reported by the local genomic context database.
Genomic interval157 060-158 091 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 416-158 091 ntGCF_028310175::NZ_JAQKRC010000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310175::NZ_JAQKRC010000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span156 416-158 091 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 416 nt158 091 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN66_RS06570GCF_028310175#PMN66_RS06570
RROmpR
156 416-157 063 nt · Forward (+)
PMN66_RS06575GCF_028310175#PMN66_RS06575
HKClassicCurrent focus
157 060-158 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028310175#PMN66_RS06575The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2910542
Simplified PFAM architecture for HKOC_2910542
PFAM domain coverage: 172 / 265 aa (64.9%)
1 aa265 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[46-109] | HATPase_c[157-264]
- Domain count: 2
- Matched identifier: HKOC_2910542
- Positioned domains: HisKA 46-109 ; HATPase_c 157-264
Cluster members and taxonomy
Representative gene: GCF_028310175#PMN66_RS06575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310175
AssemblyASM2831017v1 · Scaffoldhaploid
Genome composition2 163 556 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key