1 HisKA#1
188-253 aa · 66 aa · 14.1% of protein
Raw token
HisKA:188:0.00000000000377:253:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN82_RS01615
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_028310145
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028310145#PMN82_RS01615Stable P2CS identifier used across views.
GenomeGCF_028310145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 468 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-428 aa · 113 aa · 24.1% of protein
Raw token
HATPase_c:316:4.41e-29:428:113:109- Raw architecture: HisKA:188:0.00000000000377:253:66:64#HATPase_c:316:4.41e-29:428:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028310145::NZ_JAQKRD010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span419619-421801Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN82_01615RefSeq proteinWP_211128821.1
Context group ID
GCF_028310145::NZ_JAQKRD010000001.1::G00005Context members
PMN82_RS01615PMN82_RS01620
Partner locus tags
PMN82_RS01615PMN82_RS01620
Partner old locus tags
PMN82_01615PMN82_01620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_211128821.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN82_RS01615Primary locus identifier stored in the genes table.
Old locus tagPMN82_01615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRD010000001.1Sequence record reported by the local genomic context database.
Genomic interval419 619-421 025 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span419 619-421 801 ntGCF_028310145::NZ_JAQKRD010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310145::NZ_JAQKRD010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span419 619-421 801 nt2 183 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
419 619 nt421 801 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN82_RS01615GCF_028310145#PMN82_RS01615
HKClassicCurrent focus
419 619-421 025 nt · Forward (+)
PMN82_RS01620GCF_028310145#PMN82_RS01620
RROmpR
421 097-421 801 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669825#KFO26_RS01615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1741846
Simplified PFAM architecture for HKOC_1741846
PFAM domain coverage: 177 / 468 aa (37.8%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[188-253] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_1741846
- Positioned domains: HisKA 188-253 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_015669825#KFO26_RS01615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310145
AssemblyASM2831014v1 · Scaffoldhaploid
Genome composition2 335 710 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 14CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key