1 Response_reg#1
13-122 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:13:3.4e-37:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMM38_RS01660
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_028310055
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028310055#PMM38_RS01660Stable P2CS identifier used across views.
GenomeGCF_028310055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 229 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-229 aa · 67 aa · 29.3% of protein
Raw token
Trans_reg_C:163:6e-25:229:67:77- Raw architecture: Response_reg:13:3.4e-37:122:111:111#Trans_reg_C:163:6e-25:229:67:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028310055::NZ_JAQKQZ010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span333317-335735Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMM38_01660RefSeq proteinWP_271734752.1
Context group ID
GCF_028310055::NZ_JAQKQZ010000001.1::G00007Context members
PMM38_RS01655PMM38_RS01660
Partner locus tags
PMM38_RS01655PMM38_RS01660
Partner old locus tags
PMM38_01655PMM38_01660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_271734752.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD4W5L5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD4W5L5_BIFPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMM38_RS01660Primary locus identifier stored in the genes table.
Old locus tagPMM38_01660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval335 046-335 735 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span333 317-335 735 ntGCF_028310055::NZ_JAQKQZ010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028310055::NZ_JAQKQZ010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span333 317-335 735 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
333 317 nt335 735 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMM38_RS01655GCF_028310055#PMM38_RS01655
HKClassic
333 317-334 987 nt · Reverse (-)
PMM38_RS01660GCF_028310055#PMM38_RS01660
RROmpRCurrent focus
335 046-335 735 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001025215#BBPC_RS03280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0807796
Simplified PFAM architecture for RROC_0807796
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0807796
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 165-239 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_001025215#BBPC_RS03280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028310055
AssemblyASM2831005v1 · Scaffoldhaploid
Genome composition2 363 451 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 12 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key