1 Response_reg#1
3-115 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:3:3.31e-31:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS16910
Response regulator, unclassified
Blautia wexlerae · GCF_028309985
ClassRRTypeunclassifiedLength504 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028309985#PMN76_RS16910Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 504 aa (38.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-452 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:411:0.0000052:452:42:423 HTH_AraC#3
466-502 aa · 37 aa · 7.3% of protein
Raw token
HTH_AraC:466:0.0000000622:502:37:42- Raw architecture: Response_reg:3:3.31e-31:115:113:111#HTH_AraC:411:0.0000052:452:42:42#HTH_AraC:466:0.0000000622:502:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028309985::NZ_JAQKQV010000055.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8576-11950Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_16910RefSeq proteinWP_195999116.1
Context group ID
GCF_028309985::NZ_JAQKQV010000055.1::G00056Context members
PMN76_RS16905PMN76_RS16910
Partner locus tags
PMN76_RS16905PMN76_RS16910
Partner old locus tags
PMN76_16905PMN76_16910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195999116.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS16910Primary locus identifier stored in the genes table.
Old locus tagPMN76_16910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000055.1Sequence record reported by the local genomic context database.
Genomic interval10 436-11 950 nt1 515 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 576-11 950 ntGCF_028309985::NZ_JAQKQV010000055.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000055.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000055.1All displayed genes belong to this local TCS context.
Neighborhood span8 576-11 950 nt3 375 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 576 nt11 950 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN76_RS16905GCF_028309985#PMN76_RS16905
HKClassic
8 576-10 369 nt · Forward (+)
PMN76_RS16910GCF_028309985#PMN76_RS16910
RRunclassifiedCurrent focus
10 436-11 950 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668375#I4V46_RS12335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0154178
Simplified PFAM architecture for RROC_0154178
PFAM domain coverage: 191 / 504 aa (37.9%)
1 aa504 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[424-502]
- Domain count: 2
- Matched identifier: RROC_0154178
- Positioned domains: Response_reg 3-114 ; HTH_18 424-502
Cluster members and taxonomy
Representative gene: GCF_015668375#I4V46_RS12335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key