1 Response_reg#1
3-110 aa · 108 aa · 20.6% of protein
Raw token
Response_reg:3:1.86e-29:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS13760
Response regulator, unclassified
Blautia wexlerae · GCF_028309985
ClassRRTypeunclassifiedLength524 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028309985#PMN76_RS13760Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length524 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 524 aa (27.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa524 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
482-519 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:482:0.0000000179:519:38:42- Raw architecture: Response_reg:3:1.86e-29:110:108:111#HTH_AraC:482:0.0000000179:519:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028309985::NZ_JAQKQV010000036.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2221-5548Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_13765RefSeq proteinWP_055057920.1
Context group ID
GCF_028309985::NZ_JAQKQV010000036.1::G00044Context members
PMN76_RS13760PMN76_RS13765
Partner locus tags
PMN76_RS13760PMN76_RS13765
Partner old locus tags
PMN76_13765PMN76_13770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055057920.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XYJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XYJ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS13760Primary locus identifier stored in the genes table.
Old locus tagPMN76_13765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000036.1Sequence record reported by the local genomic context database.
Genomic interval2 221-3 795 nt1 575 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 221-5 548 ntGCF_028309985::NZ_JAQKQV010000036.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000036.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000036.1All displayed genes belong to this local TCS context.
Neighborhood span2 221-5 548 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 221 nt5 548 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN76_RS13760GCF_028309985#PMN76_RS13760
RRunclassifiedCurrent focus
2 221-3 795 nt · Reverse (-)
PMN76_RS13765GCF_028309985#PMN76_RS13765
HKClassic
3 773-5 548 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS13530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0120339
Simplified PFAM architecture for RROC_0120339
PFAM domain coverage: 189 / 524 aa (36.1%)
1 aa524 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[442-519]
- Domain count: 2
- Matched identifier: RROC_0120339
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; HTH_18 442-519 ; HTH_18 442-519
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS13530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key