1 Response_reg#1
1-107 aa · 107 aa · 94.7% of protein
Raw token
Response_reg:1:2e-24:107:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS11065
Response regulator, CheY family
Blautia wexlerae · GCF_028309985
ClassRRTypeCheYLength113 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028309985#PMN76_RS11065Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length113 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 113 aa (94.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa113 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2e-24:107:107:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028309985::NZ_JAQKQV010000025.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14453-14794Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_11065RefSeq proteinWP_242860542.1
Context group ID
GCF_028309985::NZ_JAQKQV010000025.1::G00029Context members
PMN76_RS11065
Partner locus tags
PMN76_RS11065
Partner old locus tags
PMN76_11065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242860542.1Primary protein accession used for annex mappings.
UniProt accessionA0A174T8Z0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174T8Z0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS11065Primary locus identifier stored in the genes table.
Old locus tagPMN76_11065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000025.1Sequence record reported by the local genomic context database.
Genomic interval14 453-14 794 nt342 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 453-14 794 ntGCF_028309985::NZ_JAQKQV010000025.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000025.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000025.1All displayed genes belong to this local TCS context.
Neighborhood span14 453-14 794 nt342 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 453 nt14 794 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMN76_RS11065GCF_028309985#PMN76_RS11065
RRCheYCurrent focus
14 453-14 794 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS18400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2467431
Simplified PFAM architecture for RROC_2467431
PFAM domain coverage: 105 / 113 aa (92.9%)
1 aa113 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-107]
- Domain count: 1
- Matched identifier: RROC_2467431
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS18400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key