1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:7.53e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS10715
Response regulator OmpR family
Blautia wexlerae · GCF_028309985
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028309985#PMN76_RS10715Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:4.74e-32:222:77:77- Raw architecture: Response_reg:6:7.53e-33:116:112:111#Trans_reg_C:149:4.74e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028309985::NZ_JAQKQV010000024.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2427-4648Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_10715RefSeq proteinWP_020993968.1
Context group ID
GCF_028309985::NZ_JAQKQV010000024.1::G00026Context members
PMN76_RS10710PMN76_RS10715
Partner locus tags
PMN76_RS10710PMN76_RS10715
Partner old locus tags
PMN76_10710PMN76_10715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020993968.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NZ16Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NZ16_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS10715Primary locus identifier stored in the genes table.
Old locus tagPMN76_10715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000024.1Sequence record reported by the local genomic context database.
Genomic interval3 968-4 648 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 427-4 648 ntGCF_028309985::NZ_JAQKQV010000024.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000024.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000024.1All displayed genes belong to this local TCS context.
Neighborhood span2 427-4 648 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 427 nt4 648 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN76_RS10710GCF_028309985#PMN76_RS10710
HKClassic
2 427-3 971 nt · Reverse (-)
PMN76_RS10715GCF_028309985#PMN76_RS10715
RROmpRCurrent focus
3 968-4 648 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0115190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410740
Simplified PFAM architecture for RROC_1410740
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1410740
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0115190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key