1 Response_reg#1
6-110 aa · 105 aa · 11.3% of protein
Raw token
Response_reg:6:4.34e-25:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS10680
Response regulator, PleD_VieA family
Blautia wexlerae · GCF_028309985
ClassRRTypePleD_VieALength933 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028309985#PMN76_RS10680Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length933 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage479 / 933 aa (51.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa933 aa
Domain-by-domain annotation3 items
2 GGDEF#2
517-653 aa · 137 aa · 14.7% of protein
Raw token
GGDEF:517:0.0000000000108:653:151:1603 EAL#3
683-919 aa · 237 aa · 25.4% of protein
Raw token
EAL:683:2.6e-72:919:237:235- Raw architecture: Response_reg:6:4.34e-25:110:106:111#GGDEF:517:0.0000000000108:653:151:160#EAL:683:2.6e-72:919:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028309985::NZ_JAQKQV010000023.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span67589-70390Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_10680RefSeq proteinWP_173700686.1
Context group ID
GCF_028309985::NZ_JAQKQV010000023.1::G00025Context members
PMN76_RS10680
Partner locus tags
PMN76_RS10680
Partner old locus tags
PMN76_10680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173700686.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS10680Primary locus identifier stored in the genes table.
Old locus tagPMN76_10680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000023.1Sequence record reported by the local genomic context database.
Genomic interval67 589-70 390 nt2 802 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 589-70 390 ntGCF_028309985::NZ_JAQKQV010000023.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000023.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000023.1All displayed genes belong to this local TCS context.
Neighborhood span67 589-70 390 nt2 802 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 589 nt70 390 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMN76_RS10680GCF_028309985#PMN76_RS10680
RRPleD_VieACurrent focus
67 589-70 390 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302035#G4969_RS00925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0010722
Simplified PFAM architecture for RROC_0010722
PFAM domain coverage: 486 / 933 aa (52.1%)
1 aa933 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[6-118] | GGDEF[516-653] | EAL[685-919]
- Domain count: 3
- Matched identifier: RROC_0010722
- Positioned domains: Response_reg 6-118 ; GGDEF 516-653 ; EAL 685-919
Cluster members and taxonomy
Representative gene: GCF_013302035#G4969_RS00925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key