1 Response_reg#1
5-117 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:5:1.02e-28:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS07780
Response regulator, unclassified
Blautia wexlerae · GCF_028309985
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028309985#PMN76_RS07780Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 537 aa (34.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-485 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:444:0.000000114:485:42:423 HTH_AraC#3
505-535 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:505:0.00000122:535:31:42- Raw architecture: Response_reg:5:1.02e-28:117:113:111#HTH_AraC:444:0.000000114:485:42:42#HTH_AraC:505:0.00000122:535:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028309985::NZ_JAQKQV010000015.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52204-55649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_07780RefSeq proteinWP_271728203.1
Context group ID
GCF_028309985::NZ_JAQKQV010000015.1::G00016Context members
PMN76_RS07780PMN76_RS07785
Partner locus tags
PMN76_RS07780PMN76_RS07785
Partner old locus tags
PMN76_07780PMN76_07785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271728203.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS07780Primary locus identifier stored in the genes table.
Old locus tagPMN76_07780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000015.1Sequence record reported by the local genomic context database.
Genomic interval52 204-53 817 nt1 614 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 204-55 649 ntGCF_028309985::NZ_JAQKQV010000015.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000015.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000015.1All displayed genes belong to this local TCS context.
Neighborhood span52 204-55 649 nt3 446 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 204 nt55 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN76_RS07780GCF_028309985#PMN76_RS07780
RRunclassifiedCurrent focus
52 204-53 817 nt · Reverse (-)
PMN76_RS07785GCF_028309985#PMN76_RS07785
HKClassic
53 817-55 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028309985#PMN76_RS07780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0097469
Simplified PFAM architecture for RROC_0097469
PFAM domain coverage: 190 / 537 aa (35.4%)
1 aa537 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[457-535]
- Domain count: 2
- Matched identifier: RROC_0097469
- Positioned domains: Response_reg 5-115 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_028309985#PMN76_RS07780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key