1 Response_reg#1
4-112 aa · 109 aa · 39.5% of protein
Raw token
Response_reg:4:2.45e-25:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS07690
Response regulator, unclassified
Blautia wexlerae · GCF_028309985
ClassRRTypeunclassifiedLength276 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028309985#PMN76_RS07690Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 276 aa (68.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
165-206 aa · 42 aa · 15.2% of protein
Raw token
HTH_AraC:165:0.0000000092:206:42:423 HTH_AraC#3
217-254 aa · 38 aa · 13.8% of protein
Raw token
HTH_AraC:217:0.00000000545:254:38:42- Raw architecture: Response_reg:4:2.45e-25:112:112:111#HTH_AraC:165:0.0000000092:206:42:42#HTH_AraC:217:0.00000000545:254:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028309985::NZ_JAQKQV010000015.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28825-31444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_07690RefSeq proteinWP_271728193.1
Context group ID
GCF_028309985::NZ_JAQKQV010000015.1::G00015Context members
PMN76_RS07685PMN76_RS07690
Partner locus tags
PMN76_RS07685PMN76_RS07690
Partner old locus tags
PMN76_07685PMN76_07690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271728193.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS07690Primary locus identifier stored in the genes table.
Old locus tagPMN76_07690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000015.1Sequence record reported by the local genomic context database.
Genomic interval30 614-31 444 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 825-31 444 ntGCF_028309985::NZ_JAQKQV010000015.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000015.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000015.1All displayed genes belong to this local TCS context.
Neighborhood span28 825-31 444 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 825 nt31 444 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN76_RS07685GCF_028309985#PMN76_RS07685
HKClassic
28 825-30 612 nt · Reverse (-)
PMN76_RS07690GCF_028309985#PMN76_RS07690
RRunclassifiedCurrent focus
30 614-31 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028309985#PMN76_RS07690The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0604015
Simplified PFAM architecture for RROC_0604015
PFAM domain coverage: 188 / 276 aa (68.1%)
1 aa276 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-113] | HTH_AraC[165-205] | HTH_AraC[218-254]
- Domain count: 3
- Matched identifier: RROC_0604015
- Positioned domains: Response_reg 4-113 ; HTH_AraC 165-205 ; HTH_AraC 218-254
Cluster members and taxonomy
Representative gene: GCF_028309985#PMN76_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key