1 Response_reg#1
4-118 aa · 115 aa · 48.9% of protein
Raw token
Response_reg:4:5.24e-20:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS01410
Response regulator LytTR family
Blautia wexlerae · GCF_028309985
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028309985#PMN76_RS01410Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 235 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 39.1% of protein
Raw token
LytTR:138:0.000000000000201:229:97:98- Raw architecture: Response_reg:4:5.24e-20:118:117:111#LytTR:138:0.000000000000201:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028309985::NZ_JAQKQV010000003.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42137-42844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_01410RefSeq proteinWP_055057283.1
Context group ID
GCF_028309985::NZ_JAQKQV010000003.1::G00048Context members
PMN76_RS01410
Partner locus tags
PMN76_RS01410
Partner old locus tags
PMN76_01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055057283.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X945Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X945_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS01410Primary locus identifier stored in the genes table.
Old locus tagPMN76_01410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000003.1Sequence record reported by the local genomic context database.
Genomic interval42 137-42 844 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 137-42 844 ntGCF_028309985::NZ_JAQKQV010000003.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000003.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span42 137-42 844 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 137 nt42 844 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMN76_RS01410GCF_028309985#PMN76_RS01410
RRLytTRCurrent focus
42 137-42 844 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405455#ARA49_RS01215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1020292
Simplified PFAM architecture for RROC_1020292
PFAM domain coverage: 203 / 235 aa (86.4%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_1020292
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_001405455#ARA49_RS01215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key