1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:1.08e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN76_RS00345
Response regulator, unclassified
Blautia wexlerae · GCF_028309985
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028309985#PMN76_RS00345Stable P2CS identifier used across views.
GenomeGCF_028309985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 539 aa (28.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
443-482 aa · 40 aa · 7.4% of protein
Raw token
HTH_AraC:443:0.0000232:482:40:42- Raw architecture: Response_reg:4:1.08e-26:117:114:111#HTH_AraC:443:0.0000232:482:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028309985::NZ_JAQKQV010000001.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81737-85158Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN76_00345RefSeq proteinWP_271726773.1
Context group ID
GCF_028309985::NZ_JAQKQV010000001.1::G00022Context members
PMN76_RS00340PMN76_RS00345
Partner locus tags
PMN76_RS00340PMN76_RS00345
Partner old locus tags
PMN76_00340PMN76_00345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271726773.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN76_RS00345Primary locus identifier stored in the genes table.
Old locus tagPMN76_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKQV010000001.1Sequence record reported by the local genomic context database.
Genomic interval83 539-85 158 nt1 620 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 737-85 158 ntGCF_028309985::NZ_JAQKQV010000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028309985::NZ_JAQKQV010000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKQV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span81 737-85 158 nt3 422 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 737 nt85 158 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMN76_RS00340GCF_028309985#PMN76_RS00340
HKClassic
81 737-83 542 nt · Reverse (-)
PMN76_RS00345GCF_028309985#PMN76_RS00345
RRunclassifiedCurrent focus
83 539-85 158 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028309985#PMN76_RS00345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0092974
Simplified PFAM architecture for RROC_0092974
PFAM domain coverage: 318 / 539 aa (59.0%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[173-299] | HTH_18[458-535]
- Domain count: 3
- Matched identifier: RROC_0092974
- Positioned domains: Response_reg 4-116 ; GGDEF_2 173-299 ; HTH_18 458-535
Cluster members and taxonomy
Representative gene: GCF_028309985#PMN76_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_028309985
AssemblyASM2830998v1 · Scaffoldhaploid
Genome composition4 391 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 130 · HK 61 · RR 68CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key