1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.76e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS14715
Response regulator OmpR family
Clostridium paraputrificum · GCF_028210495
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210495#PM004_RS14715Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:149:6.94e-26:224:77:77- Raw architecture: Response_reg:5:1.76e-34:114:111:111#Trans_reg_C:149:6.94e-26:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210495::NZ_JAQLHL010000015.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66388-68434Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_14725RefSeq proteinWP_065254831.1
Context group ID
GCF_028210495::NZ_JAQLHL010000015.1::G00009Context members
PM004_RS14715PM004_RS14720
Partner locus tags
PM004_RS14715PM004_RS14720
Partner old locus tags
PM004_14725PM004_14730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065254831.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RKS4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RKS4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS14715Primary locus identifier stored in the genes table.
Old locus tagPM004_14725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000015.1Sequence record reported by the local genomic context database.
Genomic interval66 388-67 086 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 388-68 434 ntGCF_028210495::NZ_JAQLHL010000015.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000015.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000015.1All displayed genes belong to this local TCS context.
Neighborhood span66 388-68 434 nt2 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 388 nt68 434 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM004_RS14715GCF_028210495#PM004_RS14715
RROmpRCurrent focus
66 388-67 086 nt · Forward (+)
PM004_RS14720GCF_028210495#PM004_RS14720
HKClassic
67 070-68 434 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001679805#CP373A1_RS16175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1125405
Simplified PFAM architecture for RROC_1125405
PFAM domain coverage: 183 / 232 aa (78.9%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-224]
- Domain count: 2
- Matched identifier: RROC_1125405
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-224 ; Trans_reg_C 152-224
Cluster members and taxonomy
Representative gene: GCF_001679805#CP373A1_RS16175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key