1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:1.64e-26:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS11675
Response regulator OmpR family
Clostridium paraputrificum · GCF_028210495
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210495#PM004_RS11675Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-220 aa · 72 aa · 32.6% of protein
Raw token
Trans_reg_C:149:8.88e-27:220:73:77- Raw architecture: Response_reg:4:1.64e-26:112:110:111#Trans_reg_C:149:8.88e-27:220:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210495::NZ_JAQLHL010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span97010-98685Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_11680RefSeq proteinWP_027098902.1
Context group ID
GCF_028210495::NZ_JAQLHL010000010.1::G00002Context members
PM004_RS11675PM004_RS11680
Partner locus tags
PM004_RS11675PM004_RS11680
Partner old locus tags
PM004_11680PM004_11685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098902.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RM01Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RM01_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS11675Primary locus identifier stored in the genes table.
Old locus tagPM004_11680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000010.1Sequence record reported by the local genomic context database.
Genomic interval97 010-97 675 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 010-98 685 ntGCF_028210495::NZ_JAQLHL010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000010.1All displayed genes belong to this local TCS context.
Neighborhood span97 010-98 685 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 010 nt98 685 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM004_RS11675GCF_028210495#PM004_RS11675
RROmpRCurrent focus
97 010-97 675 nt · Forward (+)
PM004_RS11680GCF_028210495#PM004_RS11680
HKClassic
97 672-98 685 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0112535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1679493
Simplified PFAM architecture for RROC_1679493
PFAM domain coverage: 181 / 221 aa (81.9%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-220]
- Domain count: 2
- Matched identifier: RROC_1679493
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-220 ; Trans_reg_C 149-220
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0112535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key