1 PAS_9#1
28-126 aa · 99 aa · 14.0% of protein
Raw token
PAS_9:28:0.00000000194:126:99:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS09225
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210495
ClassHKTypeClassicLength707 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210495#PM004_RS09225Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length707 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage280 / 707 aa (39.6%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa707 aa
Domain-by-domain annotation3 items
2 HisKA#2
449-515 aa · 67 aa · 9.5% of protein
Raw token
HisKA:449:0.0000000000000741:515:67:643 HATPase_c#3
563-676 aa · 114 aa · 16.1% of protein
Raw token
HATPase_c:563:8.64e-27:676:114:109- Raw architecture: PAS_9:28:0.00000000194:126:99:102#HisKA:449:0.0000000000000741:515:67:64#HATPase_c:563:8.64e-27:676:114:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210495::NZ_JAQLHL010000007.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span175799-177922Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_09235RefSeq proteinWP_051195917.1
Context group ID
GCF_028210495::NZ_JAQLHL010000007.1::G00038Context members
PM004_RS09225
Partner locus tags
PM004_RS09225
Partner old locus tags
PM004_09235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051195917.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TAF4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TAF4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS09225Primary locus identifier stored in the genes table.
Old locus tagPM004_09235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000007.1Sequence record reported by the local genomic context database.
Genomic interval175 799-177 922 nt2 124 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span175 799-177 922 ntGCF_028210495::NZ_JAQLHL010000007.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000007.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000007.1All displayed genes belong to this local TCS context.
Neighborhood span175 799-177 922 nt2 124 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 799 nt177 922 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PM004_RS09225GCF_028210495#PM004_RS09225
HKClassicCurrent focus
175 799-177 922 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS19565Use this link to inspect the representative gene detail.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0756115
Simplified PFAM architecture for HKOC_0756115
PFAM domain coverage: 275 / 707 aa (38.9%)
1 aa707 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[29-124] | HisKA[449-514] | HATPase_c[563-675]
- Domain count: 3
- Matched identifier: HKOC_0756115
- Positioned domains: PAS_9 29-124 ; HisKA 449-514 ; HATPase_c 563-675
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS19565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key