1 Response_reg#1
8-122 aa · 115 aa · 45.6% of protein
Raw token
Response_reg:8:1.57e-27:122:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS08270
Response regulator Spo0A family
Clostridium paraputrificum · GCF_028210495
ClassRRTypeSpo0ALength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210495#PM004_RS08270Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 252 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
160-252 aa · 93 aa · 36.9% of protein
Raw token
Spo0A_C:160:1.4e-57:252:93:104- Raw architecture: Response_reg:8:1.57e-27:122:115:111#Spo0A_C:160:1.4e-57:252:93:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210495::NZ_JAQLHL010000007.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12038-12796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_08280RefSeq proteinWP_271841655.1
Context group ID
GCF_028210495::NZ_JAQLHL010000007.1::G00033Context members
PM004_RS08270
Partner locus tags
PM004_RS08270
Partner old locus tags
PM004_08280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271841655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS08270Primary locus identifier stored in the genes table.
Old locus tagPM004_08280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000007.1Sequence record reported by the local genomic context database.
Genomic interval12 038-12 796 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 038-12 796 ntGCF_028210495::NZ_JAQLHL010000007.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000007.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000007.1All displayed genes belong to this local TCS context.
Neighborhood span12 038-12 796 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 038 nt12 796 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PM004_RS08270GCF_028210495#PM004_RS08270
RRSpo0ACurrent focus
12 038-12 796 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0105710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0614576
Simplified PFAM architecture for RROC_0614576
PFAM domain coverage: 218 / 270 aa (80.7%)
1 aa270 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[8-121] | Spo0A_C[160-263]
- Domain count: 2
- Matched identifier: RROC_0614576
- Positioned domains: Response_reg 8-121 ; Response_reg 8-121 ; Spo0A_C 160-263 ; Spo0A_C 160-263
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0105710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key