1 Response_reg#1
4-113 aa · 110 aa · 44.9% of protein
Raw token
Response_reg:4:0.000000000000191:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS07265
Response regulator LytTR family
Clostridium paraputrificum · GCF_028210495
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210495#PM004_RS07265Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 245 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-242 aa · 93 aa · 38.0% of protein
Raw token
LytTR:150:7.67e-18:242:97:98- Raw architecture: Response_reg:4:0.000000000000191:113:110:111#LytTR:150:7.67e-18:242:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210495::NZ_JAQLHL010000006.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21127-21864Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_07280RefSeq proteinWP_027098056.1
Context group ID
GCF_028210495::NZ_JAQLHL010000006.1::G00031Context members
PM004_RS07265
Partner locus tags
PM004_RS07265
Partner old locus tags
PM004_07280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098056.1Primary protein accession used for annex mappings.
UniProt accessionA0A174I406Primary UniProt accession resolved in the annex database.
UniProt IDA0A174I406_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS07265Primary locus identifier stored in the genes table.
Old locus tagPM004_07280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000006.1Sequence record reported by the local genomic context database.
Genomic interval21 127-21 864 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 127-21 864 ntGCF_028210495::NZ_JAQLHL010000006.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000006.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000006.1All displayed genes belong to this local TCS context.
Neighborhood span21 127-21 864 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 127 nt21 864 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PM004_RS07265GCF_028210495#PM004_RS07265
RRLytTRCurrent focus
21 127-21 864 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0107705Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0790146
Simplified PFAM architecture for RROC_0790146
PFAM domain coverage: 208 / 245 aa (84.9%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-120] | LytTR[150-241]
- Domain count: 2
- Matched identifier: RROC_0790146
- Positioned domains: Response_reg 5-120 ; Response_reg 5-120 ; LytTR 150-241 ; LytTR 150-241
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0107705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key