1 HisKA#1
87-152 aa · 66 aa · 21.2% of protein
Raw token
HisKA:87:0.0000000000000446:152:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS07060
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210495
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210495#PM004_RS07060Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 311 aa (56.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-307 aa · 110 aa · 35.4% of protein
Raw token
HATPase_c:198:1.83e-24:307:110:109- Raw architecture: HisKA:87:0.0000000000000446:152:66:64#HATPase_c:198:1.83e-24:307:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210495::NZ_JAQLHL010000005.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191970-193600Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_07075RefSeq proteinWP_195542021.1
Context group ID
GCF_028210495::NZ_JAQLHL010000005.1::G00030Context members
PM004_RS07055PM004_RS07060
Partner locus tags
PM004_RS07055PM004_RS07060
Partner old locus tags
PM004_07070PM004_07075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195542021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS07060Primary locus identifier stored in the genes table.
Old locus tagPM004_07075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000005.1Sequence record reported by the local genomic context database.
Genomic interval192 665-193 600 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 970-193 600 ntGCF_028210495::NZ_JAQLHL010000005.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000005.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000005.1All displayed genes belong to this local TCS context.
Neighborhood span191 970-193 600 nt1 631 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 970 nt193 600 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM004_RS07055GCF_028210495#PM004_RS07055
RROmpR
191 970-192 665 nt · Forward (+)
PM004_RS07060GCF_028210495#PM004_RS07060
HKClassicCurrent focus
192 665-193 600 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015558145#I2G47_RS05535Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2877400
Simplified PFAM architecture for HKOC_2877400
PFAM domain coverage: 175 / 311 aa (56.3%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-152] | HATPase_c[199-307]
- Domain count: 2
- Matched identifier: HKOC_2877400
- Positioned domains: HisKA 87-152 ; HATPase_c 199-307
Cluster members and taxonomy
Representative gene: GCF_015558145#I2G47_RS05535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key