1 HisKA#1
249-315 aa · 67 aa · 14.2% of protein
Raw token
HisKA:249:0.000000000000217:315:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS05900
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210495
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210495#PM004_RS05900Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 473 aa (37.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
363-470 aa · 108 aa · 22.8% of protein
Raw token
HATPase_c:363:1.16e-27:470:108:109- Raw architecture: HisKA:249:0.000000000000217:315:67:64#HATPase_c:363:1.16e-27:470:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210495::NZ_JAQLHL010000004.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span212905-215028Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_05910RefSeq proteinWP_027099370.1
Context group ID
GCF_028210495::NZ_JAQLHL010000004.1::G00028Context members
PM004_RS05900PM004_RS05905
Partner locus tags
PM004_RS05900PM004_RS05905
Partner old locus tags
PM004_05910PM004_05915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099370.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZW93Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZW93_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS05900Primary locus identifier stored in the genes table.
Old locus tagPM004_05910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000004.1Sequence record reported by the local genomic context database.
Genomic interval212 905-214 326 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span212 905-215 028 ntGCF_028210495::NZ_JAQLHL010000004.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000004.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000004.1All displayed genes belong to this local TCS context.
Neighborhood span212 905-215 028 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
212 905 nt215 028 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM004_RS05900GCF_028210495#PM004_RS05900
HKClassicCurrent focus
212 905-214 326 nt · Reverse (-)
PM004_RS05905GCF_028210495#PM004_RS05905
RROmpR
214 333-215 028 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0115485Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1687289
Simplified PFAM architecture for HKOC_1687289
PFAM domain coverage: 174 / 473 aa (36.8%)
1 aa473 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[250-315] | HATPase_c[363-470]
- Domain count: 2
- Matched identifier: HKOC_1687289
- Positioned domains: HisKA 250-315 ; HATPase_c 363-470
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0115485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key