1 Response_reg#1
5-116 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:5:6.68e-36:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS05255
Response regulator, CheY family
Clostridium paraputrificum · GCF_028210495
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210495#PM004_RS05255Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:6.68e-36:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210495::NZ_JAQLHL010000004.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73742-74104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_05260RefSeq proteinWP_027099487.1
Context group ID
GCF_028210495::NZ_JAQLHL010000004.1::G00026Context members
PM004_RS05255
Partner locus tags
PM004_RS05255
Partner old locus tags
PM004_05260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099487.1Primary protein accession used for annex mappings.
UniProt accessionA0A174S798Primary UniProt accession resolved in the annex database.
UniProt IDA0A174S798_9CLOTDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS05255Primary locus identifier stored in the genes table.
Old locus tagPM004_05260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000004.1Sequence record reported by the local genomic context database.
Genomic interval73 742-74 104 nt363 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 742-74 104 ntGCF_028210495::NZ_JAQLHL010000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000004.1All displayed genes belong to this local TCS context.
Neighborhood span73 742-74 104 nt363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 742 nt74 104 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PM004_RS05255GCF_028210495#PM004_RS05255
RRCheYCurrent focus
73 742-74 104 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0116140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2435170
Simplified PFAM architecture for RROC_2435170
PFAM domain coverage: 112 / 120 aa (93.3%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2435170
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0116140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key