1 HisKA#1
499-563 aa · 65 aa · 9.1% of protein
Raw token
HisKA:499:9.1e-19:563:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS02365
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210495
ClassHKTypeClassicLength717 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210495#PM004_RS02365Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length717 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 717 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa717 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
616-703 aa · 88 aa · 12.3% of protein
Raw token
HATPase_c:616:0.000000000269:703:92:109- Raw architecture: HisKA:499:9.1e-19:563:65:64#HATPase_c:616:0.000000000269:703:92:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210495::NZ_JAQLHL010000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146280-149112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_02365RefSeq proteinWP_271841513.1
Context group ID
GCF_028210495::NZ_JAQLHL010000002.1::G00019Context members
PM004_RS02360PM004_RS02365
Partner locus tags
PM004_RS02360PM004_RS02365
Partner old locus tags
PM004_02360PM004_02365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271841513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS02365Primary locus identifier stored in the genes table.
Old locus tagPM004_02365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000002.1Sequence record reported by the local genomic context database.
Genomic interval146 959-149 112 nt2 154 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 280-149 112 ntGCF_028210495::NZ_JAQLHL010000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000002.1All displayed genes belong to this local TCS context.
Neighborhood span146 280-149 112 nt2 833 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 280 nt149 112 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM004_RS02360GCF_028210495#PM004_RS02360
RROmpR
146 280-146 984 nt · Forward (+)
PM004_RS02365GCF_028210495#PM004_RS02365
HKClassicCurrent focus
146 959-149 112 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210495#PM004_RS02365The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0739581
Simplified PFAM architecture for HKOC_0739581
PFAM domain coverage: 169 / 717 aa (23.6%)
1 aa717 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[499-563] | HATPase_c[611-714]
- Domain count: 2
- Matched identifier: HKOC_0739581
- Positioned domains: HisKA 499-563 ; HATPase_c 611-714
Cluster members and taxonomy
Representative gene: GCF_028210495#PM004_RS02365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key