1 HisKA#1
321-383 aa · 63 aa · 9.1% of protein
Raw token
HisKA:321:0.00000000000023:383:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM004_RS00360
Histidine kinase, Hybrid
Clostridium paraputrificum · GCF_028210495
ClassHKTypeHybridLength695 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_028210495#PM004_RS00360Stable P2CS identifier used across views.
GenomeGCF_028210495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 695 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa695 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
435-552 aa · 118 aa · 17.0% of protein
Raw token
HATPase_c:435:1.24e-27:552:118:1093 Response_reg#3
575-692 aa · 118 aa · 17.0% of protein
Raw token
Response_reg:575:1.1e-17:692:119:111- Raw architecture: HisKA:321:0.00000000000023:383:63:64#HATPase_c:435:1.24e-27:552:118:109#Response_reg:575:1.1e-17:692:119:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_028210495::NZ_JAQLHL010000001.1::G00012
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span83656-87924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM004_00360RefSeq proteinWP_271841466.1
Context group ID
GCF_028210495::NZ_JAQLHL010000001.1::G00012Context members
PM004_RS00355PM004_RS00360PM004_RS00370
Partner locus tags
PM004_RS00355PM004_RS00360PM004_RS00370
Partner old locus tags
PM004_00355PM004_00360PM004_00370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271841466.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM004_RS00360Primary locus identifier stored in the genes table.
Old locus tagPM004_00360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHL010000001.1Sequence record reported by the local genomic context database.
Genomic interval84 671-86 758 nt2 088 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 656-87 924 ntGCF_028210495::NZ_JAQLHL010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210495::NZ_JAQLHL010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHL010000001.1All displayed genes belong to this local TCS context.
Neighborhood span83 656-87 924 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 656 nt87 924 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
PM004_RS00355GCF_028210495#PM004_RS00355
RRRpfG
83 656-84 687 nt · Forward (+)
PM004_RS00360GCF_028210495#PM004_RS00360
HKHybridCurrent focus
84 671-86 758 nt · Forward (+)
PM004_RS00370GCF_028210495#PM004_RS00370
RRunclassified
87 145-87 924 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210495#PM004_RS00360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0781408
Simplified PFAM architecture for HKOC_0781408
PFAM domain coverage: 297 / 695 aa (42.7%)
1 aa695 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[322-384] | HATPase_c[435-551] | Response_reg[575-691]
- Domain count: 3
- Matched identifier: HKOC_0781408
- Positioned domains: HisKA 322-384 ; HATPase_c 435-551 ; Response_reg 575-691
Cluster members and taxonomy
Representative gene: GCF_028210495#PM004_RS00360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210495
AssemblyASM2821049v1 · Scaffoldhaploid
Genome composition3 575 990 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key