1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.000000000000944:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PL718_RS06885
Histidine kinase, Classic
Bifidobacterium breve · GCF_028203455
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028203455#PL718_RS06885Stable P2CS identifier used across views.
GenomeGCF_028203455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000312:414:98:109- Raw architecture: HisKA_3:210:0.000000000000944:271:65:68#HATPase_c:330:0.000000000312:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028203455::NZ_JAQKHP010000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span429181-431146Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPL718_06880RefSeq proteinWP_271721906.1
Context group ID
GCF_028203455::NZ_JAQKHP010000003.1::G00013Context members
PL718_RS06885PL718_RS06890
Partner locus tags
PL718_RS06885PL718_RS06890
Partner old locus tags
PL718_06880PL718_06885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271721906.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPL718_RS06885Primary locus identifier stored in the genes table.
Old locus tagPL718_06880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKHP010000003.1Sequence record reported by the local genomic context database.
Genomic interval429 181-430 470 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span429 181-431 146 ntGCF_028203455::NZ_JAQKHP010000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028203455::NZ_JAQKHP010000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKHP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span429 181-431 146 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
429 181 nt431 146 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PL718_RS06885GCF_028203455#PL718_RS06885
HKClassicCurrent focus
429 181-430 470 nt · Forward (+)
PL718_RS06890GCF_028203455#PL718_RS06890
RRNarL
430 463-431 146 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028203455#PL718_RS06885The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2184674
Simplified PFAM architecture for HKOC_2184674
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2184674
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_028203455#PL718_RS06885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_028203455
AssemblyASM2820345v1 · Scaffoldhaploid
Genome composition2 265 927 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key