1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.0000000000158:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PL718_RS00865
Histidine kinase, Classic
Bifidobacterium breve · GCF_028203455
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028203455#PL718_RS00865Stable P2CS identifier used across views.
GenomeGCF_028203455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:308:5.11e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000158:244:65:64#HATPase_c:308:5.11e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028203455::NZ_JAQKHP010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span217608-219726Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPL718_00865RefSeq proteinWP_052789313.1
Context group ID
GCF_028203455::NZ_JAQKHP010000001.1::G00001Context members
PL718_RS00865PL718_RS00870
Partner locus tags
PL718_RS00865PL718_RS00870
Partner old locus tags
PL718_00865PL718_00870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052789313.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7B0E1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7B0E1_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPL718_RS00865Primary locus identifier stored in the genes table.
Old locus tagPL718_00865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKHP010000001.1Sequence record reported by the local genomic context database.
Genomic interval217 608-218 903 nt1 296 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span217 608-219 726 ntGCF_028203455::NZ_JAQKHP010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028203455::NZ_JAQKHP010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKHP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span217 608-219 726 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
217 608 nt219 726 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PL718_RS00865GCF_028203455#PL718_RS00865
HKClassicCurrent focus
217 608-218 903 nt · Forward (+)
PL718_RS00870GCF_028203455#PL718_RS00870
RROmpR
219 022-219 726 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263915#BBM1128_RS04650Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2162463
Simplified PFAM architecture for HKOC_2162463
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2162463
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001263915#BBM1128_RS04650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_028203455
AssemblyASM2820345v1 · Scaffoldhaploid
Genome composition2 265 927 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key