1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:1.16e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PL700_RS00260
Response regulator OmpR family
Bifidobacterium catenulatum · GCF_028203345
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028203345#PL700_RS00260Stable P2CS identifier used across views.
GenomeGCF_028203345Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:3.73e-27:218:77:77- Raw architecture: Response_reg:4:1.16e-31:112:111:111#Trans_reg_C:144:3.73e-27:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028203345::NZ_JAQKHA010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58528-60605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPL700_00260RefSeq proteinWP_271724650.1
Context group ID
GCF_028203345::NZ_JAQKHA010000001.1::G00001Context members
PL700_RS00255PL700_RS00260
Partner locus tags
PL700_RS00255PL700_RS00260
Partner old locus tags
PL700_00255PL700_00260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271724650.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPL700_RS00260Primary locus identifier stored in the genes table.
Old locus tagPL700_00260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKHA010000001.1Sequence record reported by the local genomic context database.
Genomic interval59 943-60 605 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 528-60 605 ntGCF_028203345::NZ_JAQKHA010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028203345::NZ_JAQKHA010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKHA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span58 528-60 605 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 528 nt60 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PL700_RS00255GCF_028203345#PL700_RS00255
HKClassic
58 528-59 916 nt · Reverse (-)
PL700_RS00260GCF_028203345#PL700_RS00260
RROmpRCurrent focus
59 943-60 605 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028203295#PL706_RS00685Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1746153
Simplified PFAM architecture for RROC_1746153
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1746153
- Positioned domains: Response_reg 4-111 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_028203295#PL706_RS00685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_028203345
AssemblyASM2820334v1 · Scaffoldhaploid
Genome composition2 034 610 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key