1 HAMP#1
128-198 aa · 71 aa · 16.4% of protein
Raw token
HAMP:128:0.00000000892:198:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PL720_RS01825
Histidine kinase, Classic
Bifidobacterium breve · GCF_028201995
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028201995#PL720_RS01825Stable P2CS identifier used across views.
GenomeGCF_028201995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 432 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa432 aa
Domain-by-domain annotation3 items
2 HisKA#2
203-267 aa · 65 aa · 15.0% of protein
Raw token
HisKA:203:0.00000000000581:267:65:643 HATPase_c#3
314-410 aa · 97 aa · 22.5% of protein
Raw token
HATPase_c:314:0.0000000000035:410:102:109- Raw architecture: HAMP:128:0.00000000892:198:74:69#HisKA:203:0.00000000000581:267:65:64#HATPase_c:314:0.0000000000035:410:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028201995::NZ_JAQKHM010000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53236-55193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPL720_01820RefSeq proteinWP_106628442.1
Context group ID
GCF_028201995::NZ_JAQKHM010000002.1::G00002Context members
PL720_RS01825PL720_RS01830
Partner locus tags
PL720_RS01825PL720_RS01830
Partner old locus tags
PL720_01820PL720_01825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_106628442.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2QZN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2QZN3_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPL720_RS01825Primary locus identifier stored in the genes table.
Old locus tagPL720_01820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKHM010000002.1Sequence record reported by the local genomic context database.
Genomic interval53 236-54 534 nt1 299 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 236-55 193 ntGCF_028201995::NZ_JAQKHM010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028201995::NZ_JAQKHM010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKHM010000002.1All displayed genes belong to this local TCS context.
Neighborhood span53 236-55 193 nt1 958 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 236 nt55 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PL720_RS01825GCF_028201995#PL720_RS01825
HKClassicCurrent focus
53 236-54 534 nt · Reverse (-)
PL720_RS01830GCF_028201995#PL720_RS01830
RROmpR
54 531-55 193 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838225#DRBB26_RS08595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2153328
Simplified PFAM architecture for HKOC_2153328
PFAM domain coverage: 162 / 432 aa (37.5%)
1 aa432 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[203-267] | HATPase_c[316-412]
- Domain count: 2
- Matched identifier: HKOC_2153328
- Positioned domains: HisKA 203-267 ; HATPase_c 316-412
Cluster members and taxonomy
Representative gene: GCF_002838225#DRBB26_RS08595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_028201995
AssemblyASM2820199v1 · Scaffoldhaploid
Genome composition2 265 102 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key