1 HisKA_3#1
245-307 aa · 63 aa · 8.5% of protein
Raw token
HisKA_3:245:9.31e-16:307:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PL712_RS03835
Histidine kinase, Classic
Bifidobacterium breve · GCF_028201915
ClassHKTypeClassicLength738 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028201915#PL712_RS03835Stable P2CS identifier used across views.
GenomeGCF_028201915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length738 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 738 aa (21.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
348-439 aa · 92 aa · 12.5% of protein
Raw token
HATPase_c:348:0.000000000000277:439:108:109- Raw architecture: HisKA_3:245:9.31e-16:307:63:68#HATPase_c:348:0.000000000000277:439:108:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028201915::NZ_JAQKHN010000031.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span25765-27979Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPL712_03820RefSeq proteinWP_271725951.1
Context group ID
GCF_028201915::NZ_JAQKHN010000031.1::G00010Context members
PL712_RS03835
Partner locus tags
PL712_RS03835
Partner old locus tags
PL712_03820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271725951.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPL712_RS03835Primary locus identifier stored in the genes table.
Old locus tagPL712_03820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKHN010000031.1Sequence record reported by the local genomic context database.
Genomic interval25 765-27 979 nt2 215 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 765-27 979 ntGCF_028201915::NZ_JAQKHN010000031.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028201915::NZ_JAQKHN010000031.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKHN010000031.1All displayed genes belong to this local TCS context.
Neighborhood span25 765-27 979 nt2 215 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 765 nt27 979 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PL712_RS03835GCF_028201915#PL712_RS03835
HKClassicCurrent focus
25 765-27 979 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838445#DRBB27_RS04865Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0527716
Simplified PFAM architecture for HKOC_0527716
PFAM domain coverage: 428 / 822 aa (52.1%)
1 aa822 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[14-155] | HisKA_3[245-308] | HATPase_c[348-438] | DUF7134[486-616]
- Domain count: 4
- Matched identifier: HKOC_0527716
- Positioned domains: DUF7134 14-155 ; HisKA_3 245-308 ; HATPase_c 348-438 ; DUF7134 486-616
Cluster members and taxonomy
Representative gene: GCF_002838445#DRBB27_RS04865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_028201915
AssemblyASM2820191v1 · Contighaploid
Genome composition2 314 596 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key