1 HisKA#1
180-245 aa · 66 aa · 14.9% of protein
Raw token
HisKA:180:0.000000000118:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIB40_RS03485
Histidine kinase, Classic
Bifidobacterium longum · GCF_028201535
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028201535#PIB40_RS03485Stable P2CS identifier used across views.
GenomeGCF_028201535Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 443 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-428 aa · 113 aa · 25.5% of protein
Raw token
HATPase_c:316:1.08e-28:428:113:109- Raw architecture: HisKA:180:0.000000000118:245:66:64#HATPase_c:316:1.08e-28:428:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028201535::NZ_CP116390.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span792877-795111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIB40_03485RefSeq proteinWP_271710542.1
Context group ID
GCF_028201535::NZ_CP116390.1::G00008Context members
PIB40_RS03480PIB40_RS03485
Partner locus tags
PIB40_RS03480PIB40_RS03485
Partner old locus tags
PIB40_03480PIB40_03485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271710542.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIB40_RS03485Primary locus identifier stored in the genes table.
Old locus tagPIB40_03485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP116390.1Sequence record reported by the local genomic context database.
Genomic interval793 780-795 111 nt1 332 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span792 877-795 111 ntGCF_028201535::NZ_CP116390.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028201535::NZ_CP116390.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP116390.1All displayed genes belong to this local TCS context.
Neighborhood span792 877-795 111 nt2 235 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
792 877 nt795 111 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIB40_RS03480GCF_028201535#PIB40_RS03480
RROmpR
792 877-793 581 nt · Reverse (-)
PIB40_RS03485GCF_028201535#PIB40_RS03485
HKClassicCurrent focus
793 780-795 111 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028201535#PIB40_RS03485The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2047398
Simplified PFAM architecture for HKOC_2047398
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2047398
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_028201535#PIB40_RS03485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_028201535
AssemblyASM2820153v1 · Complete Genomehaploid
Genome composition2 287 838 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key