1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:4.37e-41:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG826_RS12260
Response regulator OmpR family
Coprococcus sp. AM97-06 · GCF_027697655
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697655#PG826_RS12260Stable P2CS identifier used across views.
GenomeGCF_027697655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:1.08e-34:220:77:77- Raw architecture: Response_reg:3:4.37e-41:113:111:111#Trans_reg_C:145:1.08e-34:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697655::NZ_JAQESG010000024.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24891-26926Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697655::NZ_JAQESG010000024.1::G00012Context members
PG826_RS12260PG826_RS12265
Partner locus tags
PG826_RS12260PG826_RS12265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004613479.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG826_RS12260Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESG010000024.1Sequence record reported by the local genomic context database.
Genomic interval24 891-25 565 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 891-26 926 ntGCF_027697655::NZ_JAQESG010000024.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697655::NZ_JAQESG010000024.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESG010000024.1All displayed genes belong to this local TCS context.
Neighborhood span24 891-26 926 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 891 nt26 926 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG826_RS12260GCF_027697655#PG826_RS12260
RROmpRCurrent focus
24 891-25 565 nt · Forward (+)
PG826_RS12265GCF_027697655#PG826_RS12265
HKClassic
25 562-26 926 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS09730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1562614
Simplified PFAM architecture for RROC_1562614
PFAM domain coverage: 187 / 224 aa (83.5%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1562614
- Positioned domains: Response_reg 3-113 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS09730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 993 · GCF_027697655
AssemblyASM2769765v1 · Scaffoldhaploid
Genome composition3 448 123 bp · 40,0% GCCoprococcus sp. AM97-06
Signal transduction countsGenes 69 · HK 33 · RR 36CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key