1 HisKA#1
623-688 aa · 66 aa · 7.8% of protein
Raw token
HisKA:623:7.53e-16:688:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG826_RS09940
Histidine kinase, Classic
Coprococcus sp. AM97-06 · GCF_027697655
ClassHKTypeClassicLength851 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697655#PG826_RS09940Stable P2CS identifier used across views.
GenomeGCF_027697655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length851 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 851 aa (20.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa851 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
734-842 aa · 109 aa · 12.8% of protein
Raw token
HATPase_c:734:0.000000000037:842:114:109- Raw architecture: HisKA:623:7.53e-16:688:66:64#HATPase_c:734:0.000000000037:842:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697655::NZ_JAQESG010000016.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4841-8104Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697655::NZ_JAQESG010000016.1::G00010Context members
PG826_RS09940PG826_RS09945
Partner locus tags
PG826_RS09940PG826_RS09945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004614375.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG826_RS09940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESG010000016.1Sequence record reported by the local genomic context database.
Genomic interval4 841-7 396 nt2 556 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 841-8 104 ntGCF_027697655::NZ_JAQESG010000016.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697655::NZ_JAQESG010000016.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESG010000016.1All displayed genes belong to this local TCS context.
Neighborhood span4 841-8 104 nt3 264 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 841 nt8 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG826_RS09940GCF_027697655#PG826_RS09940
HKClassicCurrent focus
4 841-7 396 nt · Reverse (-)
PG826_RS09945GCF_027697655#PG826_RS09945
RROmpR
7 409-8 104 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697655#PG826_RS09940The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0487250
Simplified PFAM architecture for HKOC_0487250
PFAM domain coverage: 158 / 851 aa (18.6%)
1 aa851 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[623-688] | HATPase_c[735-826]
- Domain count: 2
- Matched identifier: HKOC_0487250
- Positioned domains: HisKA 623-688 ; HATPase_c 735-826
Cluster members and taxonomy
Representative gene: GCF_027697655#PG826_RS09940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 993 · GCF_027697655
AssemblyASM2769765v1 · Scaffoldhaploid
Genome composition3 448 123 bp · 40,0% GCCoprococcus sp. AM97-06
Signal transduction countsGenes 69 · HK 33 · RR 36CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key