1 HisKA#1
83-148 aa · 66 aa · 21.6% of protein
Raw token
HisKA:83:0.000000198:148:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG826_RS06980
Histidine kinase, Classic
Coprococcus sp. AM97-06 · GCF_027697655
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697655#PG826_RS06980Stable P2CS identifier used across views.
GenomeGCF_027697655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 305 aa (56.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-300 aa · 105 aa · 34.4% of protein
Raw token
HATPase_c:196:1.7e-27:300:105:109- Raw architecture: HisKA:83:0.000000198:148:66:64#HATPase_c:196:1.7e-27:300:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697655::NZ_JAQESG010000008.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99929-101541Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697655::NZ_JAQESG010000008.1::G00036Context members
PG826_RS06975PG826_RS06980
Partner locus tags
PG826_RS06975PG826_RS06980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270651246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG826_RS06980Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESG010000008.1Sequence record reported by the local genomic context database.
Genomic interval100 624-101 541 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 929-101 541 ntGCF_027697655::NZ_JAQESG010000008.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697655::NZ_JAQESG010000008.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESG010000008.1All displayed genes belong to this local TCS context.
Neighborhood span99 929-101 541 nt1 613 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 929 nt101 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG826_RS06975GCF_027697655#PG826_RS06975
RROmpR
99 929-100 618 nt · Forward (+)
PG826_RS06980GCF_027697655#PG826_RS06980
HKClassicCurrent focus
100 624-101 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697655#PG826_RS06980The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882782
Simplified PFAM architecture for HKOC_2882782
PFAM domain coverage: 169 / 305 aa (55.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[84-147] | HATPase_c[196-300]
- Domain count: 2
- Matched identifier: HKOC_2882782
- Positioned domains: HisKA 84-147 ; HATPase_c 196-300
Cluster members and taxonomy
Representative gene: GCF_027697655#PG826_RS06980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 993 · GCF_027697655
AssemblyASM2769765v1 · Scaffoldhaploid
Genome composition3 448 123 bp · 40,0% GCCoprococcus sp. AM97-06
Signal transduction countsGenes 69 · HK 33 · RR 36CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key