1 sCache_like#1
33-133 aa · 101 aa · 22.8% of protein
Raw token
sCache_like:33:0.00000013:133:112:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG826_RS03415
Histidine kinase, Classic
Coprococcus sp. AM97-06 · GCF_027697655
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697655#PG826_RS03415Stable P2CS identifier used across views.
GenomeGCF_027697655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage281 / 443 aa (63.4%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation3 items
2 HisKA#2
218-284 aa · 67 aa · 15.1% of protein
Raw token
HisKA:218:5.44e-18:284:67:643 HATPase_c#3
328-440 aa · 113 aa · 25.5% of protein
Raw token
HATPase_c:328:7.94e-26:440:113:109- Raw architecture: sCache_like:33:0.00000013:133:112:114#HisKA:218:5.44e-18:284:67:64#HATPase_c:328:7.94e-26:440:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697655::NZ_JAQESG010000003.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span160731-162732Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697655::NZ_JAQESG010000003.1::G00016Context members
PG826_RS03410PG826_RS03415
Partner locus tags
PG826_RS03410PG826_RS03415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004614657.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG826_RS03415Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESG010000003.1Sequence record reported by the local genomic context database.
Genomic interval161 401-162 732 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 731-162 732 ntGCF_027697655::NZ_JAQESG010000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697655::NZ_JAQESG010000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span160 731-162 732 nt2 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 731 nt162 732 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG826_RS03410GCF_027697655#PG826_RS03410
RROmpR
160 731-161 411 nt · Forward (+)
PG826_RS03415GCF_027697655#PG826_RS03415
HKClassicCurrent focus
161 401-162 732 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697655#PG826_RS03415The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2047379
Simplified PFAM architecture for HKOC_2047379
PFAM domain coverage: 273 / 443 aa (61.6%)
1 aa443 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[34-131] | HisKA[218-284] | HATPase_c[330-437]
- Domain count: 3
- Matched identifier: HKOC_2047379
- Positioned domains: sCache_like 34-131 ; HisKA 218-284 ; HATPase_c 330-437
Cluster members and taxonomy
Representative gene: GCF_027697655#PG826_RS03415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 993 · GCF_027697655
AssemblyASM2769765v1 · Scaffoldhaploid
Genome composition3 448 123 bp · 40,0% GCCoprococcus sp. AM97-06
Signal transduction countsGenes 69 · HK 33 · RR 36CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key