1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.5e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG826_RS01800
Response regulator OmpR family
Coprococcus sp. AM97-06 · GCF_027697655
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697655#PG826_RS01800Stable P2CS identifier used across views.
GenomeGCF_027697655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:153:2.32e-35:230:78:77- Raw architecture: Response_reg:5:1.5e-37:114:111:111#Trans_reg_C:153:2.32e-35:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697655::NZ_JAQESG010000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37474-39229Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697655::NZ_JAQESG010000002.1::G00011Context members
PG826_RS01800PG826_RS01805
Partner locus tags
PG826_RS01800PG826_RS01805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118208298.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG826_RS01800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESG010000002.1Sequence record reported by the local genomic context database.
Genomic interval37 474-38 172 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 474-39 229 ntGCF_027697655::NZ_JAQESG010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697655::NZ_JAQESG010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span37 474-39 229 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 474 nt39 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG826_RS01800GCF_027697655#PG826_RS01800
RROmpRCurrent focus
37 474-38 172 nt · Forward (+)
PG826_RS01805GCF_027697655#PG826_RS01805
HKClassic
38 105-39 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697655#PG826_RS01800The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1142153
Simplified PFAM architecture for RROC_1142153
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1142153
- Positioned domains: Response_reg 5-114 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_027697655#PG826_RS01800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 993 · GCF_027697655
AssemblyASM2769765v1 · Scaffoldhaploid
Genome composition3 448 123 bp · 40,0% GCCoprococcus sp. AM97-06
Signal transduction countsGenes 69 · HK 33 · RR 36CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key