1 Response_reg#1
5-113 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:5:4.68e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG840_RS15955
Response regulator OmpR family
Coprococcus sp. AM97-35 · GCF_027697525
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697525#PG840_RS15955Stable P2CS identifier used across views.
GenomeGCF_027697525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:150:1.94e-29:225:77:77- Raw architecture: Response_reg:5:4.68e-31:113:110:111#Trans_reg_C:150:1.94e-29:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697525::NZ_JAQESL010000043.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span463-2075Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697525::NZ_JAQESL010000043.1::G00044Context members
PG840_RS15955PG840_RS15960
Partner locus tags
PG840_RS15955PG840_RS15960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025580962.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AG97Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AG97_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG840_RS15955Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESL010000043.1Sequence record reported by the local genomic context database.
Genomic interval463-1 152 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span463-2 075 ntGCF_027697525::NZ_JAQESL010000043.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697525::NZ_JAQESL010000043.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESL010000043.1All displayed genes belong to this local TCS context.
Neighborhood span463-2 075 nt1 613 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
463 nt2 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG840_RS15955GCF_027697525#PG840_RS15955
RROmpRCurrent focus
463-1 152 nt · Forward (+)
PG840_RS15960GCF_027697525#PG840_RS15960
HKClassic
1 158-2 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0119700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1250027
Simplified PFAM architecture for RROC_1250027
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1250027
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0119700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 953 · GCF_027697525
AssemblyASM2769752v1 · Scaffoldhaploid
Genome composition3 411 951 bp · 42,0% GCCoprococcus sp. AM97-35
Signal transduction countsGenes 94 · HK 48 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key