1 HAMP#1
317-386 aa · 70 aa · 11.5% of protein
Raw token
HAMP:317:0.00000000141:386:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG804_RS09020
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_027697505
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697505#PG804_RS09020Stable P2CS identifier used across views.
GenomeGCF_027697505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 607 aa (42.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 His_kinase#2
401-480 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:401:3.34e-30:480:80:803 HATPase_c#3
500-605 aa · 106 aa · 17.5% of protein
Raw token
HATPase_c:500:0.0000000000000188:605:109:109- Raw architecture: HAMP:317:0.00000000141:386:71:69#His_kinase:401:3.34e-30:480:80:80#HATPase_c:500:0.0000000000000188:605:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697505::NZ_JAQESJ010000012.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49980-53365Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697505::NZ_JAQESJ010000012.1::G00006Context members
PG804_RS09015PG804_RS09020
Partner locus tags
PG804_RS09015PG804_RS09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270437811.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG804_RS09020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESJ010000012.1Sequence record reported by the local genomic context database.
Genomic interval51 542-53 365 nt1 824 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 980-53 365 ntGCF_027697505::NZ_JAQESJ010000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697505::NZ_JAQESJ010000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESJ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span49 980-53 365 nt3 386 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 980 nt53 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG804_RS09015GCF_027697505#PG804_RS09015
RRunclassified
49 980-51 545 nt · Forward (+)
PG804_RS09020GCF_027697505#PG804_RS09020
HKClassicCurrent focus
51 542-53 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027663965#PGR39_RS11490Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1021359
Simplified PFAM architecture for HKOC_1021359
PFAM domain coverage: 183 / 607 aa (30.1%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[401-479] | HATPase_c[500-603]
- Domain count: 2
- Matched identifier: HKOC_1021359
- Positioned domains: His_kinase 401-479 ; HATPase_c 500-603
Cluster members and taxonomy
Representative gene: GCF_027663965#PGR39_RS11490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027697505
AssemblyASM2769750v1 · Scaffoldhaploid
Genome composition3 582 761 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 103 · HK 51 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key