1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.12e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG804_RS07855
Response regulator NarL family
Blautia massiliensis (ex Durand et al. 2017) · GCF_027697505
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697505#PG804_RS07855Stable P2CS identifier used across views.
GenomeGCF_027697505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 206 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.2% of protein
Raw token
HTH_LUXR:150:1.79e-21:201:52:58- Raw architecture: Response_reg:3:1.12e-25:103:101:111#HTH_LUXR:150:1.79e-21:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697505::NZ_JAQESJ010000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13673-15434Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697505::NZ_JAQESJ010000010.1::G00003Context members
PG804_RS07855PG804_RS07860
Partner locus tags
PG804_RS07855PG804_RS07860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270614296.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG804_RS07855Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval13 673-14 293 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 673-15 434 ntGCF_027697505::NZ_JAQESJ010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697505::NZ_JAQESJ010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span13 673-15 434 nt1 762 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 673 nt15 434 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG804_RS07855GCF_027697505#PG804_RS07855
RRNarLCurrent focus
13 673-14 293 nt · Reverse (-)
PG804_RS07860GCF_027697505#PG804_RS07860
HKClassic
14 427-15 434 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697505#PG804_RS07855The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2086660
Simplified PFAM architecture for RROC_2086660
PFAM domain coverage: 154 / 206 aa (74.8%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2086660
- Positioned domains: Response_reg 3-104 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_027697505#PG804_RS07855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027697505
AssemblyASM2769750v1 · Scaffoldhaploid
Genome composition3 582 761 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 103 · HK 51 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key