1 Response_reg#1
4-116 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:4:1.86e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG804_RS06780
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_027697505
ClassRRTypeunclassifiedLength504 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027697505#PG804_RS06780Stable P2CS identifier used across views.
GenomeGCF_027697505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 504 aa (36.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-448 aa · 41 aa · 8.1% of protein
Raw token
HTH_AraC:408:0.00000418:448:41:423 HTH_AraC#3
469-500 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:469:0.00000000196:500:32:42- Raw architecture: Response_reg:4:1.86e-25:116:113:111#HTH_AraC:408:0.00000418:448:41:42#HTH_AraC:469:0.00000000196:500:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027697505::NZ_JAQESJ010000008.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73384-74898Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697505::NZ_JAQESJ010000008.1::G00055Context members
PG804_RS06780
Partner locus tags
PG804_RS06780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270614266.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG804_RS06780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval73 384-74 898 nt1 515 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 384-74 898 ntGCF_027697505::NZ_JAQESJ010000008.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697505::NZ_JAQESJ010000008.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span73 384-74 898 nt1 515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 384 nt74 898 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PG804_RS06780GCF_027697505#PG804_RS06780
RRunclassifiedCurrent focus
73 384-74 898 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697505#PG804_RS06780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0154367
Simplified PFAM architecture for RROC_0154367
PFAM domain coverage: 191 / 504 aa (37.9%)
1 aa504 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[424-501]
- Domain count: 2
- Matched identifier: RROC_0154367
- Positioned domains: Response_reg 4-116 ; HTH_18 424-501
Cluster members and taxonomy
Representative gene: GCF_027697505#PG804_RS06780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027697505
AssemblyASM2769750v1 · Scaffoldhaploid
Genome composition3 582 761 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 103 · HK 51 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key