1 GAF#1
40-177 aa · 138 aa · 15.8% of protein
Raw token
GAF:40:0.0000000214:177:138:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG804_RS06470
Histidine kinase, Hybrid
Blautia massiliensis (ex Durand et al. 2017) · GCF_027697505
ClassHKTypeHybridLength875 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027697505#PG804_RS06470Stable P2CS identifier used across views.
GenomeGCF_027697505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length875 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage437 / 875 aa (49.9%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa875 aa
Domain-by-domain annotation4 items
2 HisKA#2
490-556 aa · 67 aa · 7.7% of protein
Raw token
HisKA:490:2.9e-16:556:67:643 HATPase_c#3
604-720 aa · 117 aa · 13.4% of protein
Raw token
HATPase_c:604:5.91e-28:720:117:1094 Response_reg#4
746-860 aa · 115 aa · 13.1% of protein
Raw token
Response_reg:746:4.07e-26:860:115:111- Raw architecture: GAF:40:0.0000000214:177:138:133#HisKA:490:2.9e-16:556:67:64#HATPase_c:604:5.91e-28:720:117:109#Response_reg:746:4.07e-26:860:115:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027697505::NZ_JAQESJ010000008.1::G00053
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span1304-7145Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697505::NZ_JAQESJ010000008.1::G00053Context members
PG804_RS06470PG804_RS06475
Partner locus tags
PG804_RS06470PG804_RS06475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270437229.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG804_RS06470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval1 304-3 931 nt2 628 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 304-7 145 ntGCF_027697505::NZ_JAQESJ010000008.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697505::NZ_JAQESJ010000008.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span1 304-7 145 nt5 842 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 304 nt7 145 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG804_RS06470GCF_027697505#PG804_RS06470
HKHybridCurrent focus
1 304-3 931 nt · Forward (+)
PG804_RS06475GCF_027697505#PG804_RS06475
HKHybrid
3 921-7 145 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027663965#PGR39_RS07215Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0453654
Simplified PFAM architecture for HKOC_0453654
PFAM domain coverage: 435 / 875 aa (49.7%)
1 aa875 aa
GAFHisKAHATPase_cResponse_reg
- Simplified architecture: GAF + HisKA + HATPase_c + Response_reg
- Raw architecture: GAF[41-177] | HisKA[490-556] | HATPase_c[604-719] | Response_reg[746-860]
- Domain count: 4
- Matched identifier: HKOC_0453654
- Positioned domains: GAF 41-177 ; HisKA 490-556 ; HATPase_c 604-719 ; Response_reg 746-860
Cluster members and taxonomy
Representative gene: GCF_027663965#PGR39_RS07215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027697505
AssemblyASM2769750v1 · Scaffoldhaploid
Genome composition3 582 761 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 103 · HK 51 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key