1 Response_reg#1
4-117 aa · 114 aa · 22.6% of protein
Raw token
Response_reg:4:1.07e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG815_RS01025
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_027697445
ClassRRTypeunclassifiedLength504 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027697445#PG815_RS01025Stable P2CS identifier used across views.
GenomeGCF_027697445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 504 aa (38.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
404-445 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:404:0.0000739:445:42:423 HTH_AraC#3
459-495 aa · 37 aa · 7.3% of protein
Raw token
HTH_AraC:459:0.0000000116:495:37:42- Raw architecture: Response_reg:4:1.07e-29:117:114:111#HTH_AraC:404:0.0000739:445:42:42#HTH_AraC:459:0.0000000116:495:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027697445::NZ_JAQESN010000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span244403-245917Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027697445::NZ_JAQESN010000001.1::G00006Context members
PG815_RS01025
Partner locus tags
PG815_RS01025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118263223.1Primary protein accession used for annex mappings.
UniProt accessionA0A414SB28Primary UniProt accession resolved in the annex database.
UniProt IDA0A414SB28_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG815_RS01025Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQESN010000001.1Sequence record reported by the local genomic context database.
Genomic interval244 403-245 917 nt1 515 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span244 403-245 917 ntGCF_027697445::NZ_JAQESN010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027697445::NZ_JAQESN010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQESN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span244 403-245 917 nt1 515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 403 nt245 917 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PG815_RS01025GCF_027697445#PG815_RS01025
RRunclassifiedCurrent focus
244 403-245 917 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS13470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0153958
Simplified PFAM architecture for RROC_0153958
PFAM domain coverage: 310 / 504 aa (61.5%)
1 aa504 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[152-269] | HTH_18[417-495]
- Domain count: 3
- Matched identifier: RROC_0153958
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 152-269 ; GGDEF_2 152-269 ; HTH_18 417-495 ; HTH_18 417-495
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS13470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027697445
AssemblyASM2769744v1 · Scaffoldhaploid
Genome composition3 521 844 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key