1 Response_reg#1
4-112 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:4:3.34e-29:112:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS10585
Response regulator OmpR family
Faecalimonas umbilicata · GCF_027692425
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS10585Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 224 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.1% of protein
Raw token
Trans_reg_C:147:5.32e-26:218:74:77- Raw architecture: Response_reg:4:3.34e-29:112:114:111#Trans_reg_C:147:5.32e-26:218:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000011.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35956-37934Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000011.1::G00010Context members
PG422_RS10585PG422_RS10590
Partner locus tags
PG422_RS10585PG422_RS10590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008977425.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R3JSS4Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R3JSS4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS10585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000011.1Sequence record reported by the local genomic context database.
Genomic interval35 956-36 630 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 956-37 934 ntGCF_027692425::NZ_JAQEYW010000011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000011.1All displayed genes belong to this local TCS context.
Neighborhood span35 956-37 934 nt1 979 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 956 nt37 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS10585GCF_027692425#PG422_RS10585
RROmpRCurrent focus
35 956-36 630 nt · Forward (+)
PG422_RS10590GCF_027692425#PG422_RS10590
HKClassic
36 606-37 934 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003402615#FAEUMB_RS03500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543168
Simplified PFAM architecture for RROC_1543168
PFAM domain coverage: 180 / 224 aa (80.4%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-217]
- Domain count: 2
- Matched identifier: RROC_1543168
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-217 ; Trans_reg_C 147-217
Cluster members and taxonomy
Representative gene: GCF_003402615#FAEUMB_RS03500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key