1 HAMP#1
49-127 aa · 79 aa · 22.1% of protein
Raw token
HAMP:49:0.00000771:127:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS09800
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692425
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS09800Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 358 aa (70.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
134-196 aa · 63 aa · 17.6% of protein
Raw token
HisKA:134:1.49e-17:196:63:643 HATPase_c#3
243-353 aa · 111 aa · 31.0% of protein
Raw token
HATPase_c:243:1.47e-27:353:111:109- Raw architecture: HAMP:49:0.00000771:127:79:69#HisKA:134:1.49e-17:196:63:64#HATPase_c:243:1.47e-27:353:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000010.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2728-4500Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000010.1::G00008Context members
PG422_RS09800PG422_RS09805
Partner locus tags
PG422_RS09800PG422_RS09805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009261807.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS09800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000010.1Sequence record reported by the local genomic context database.
Genomic interval2 728-3 804 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 728-4 500 ntGCF_027692425::NZ_JAQEYW010000010.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000010.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000010.1All displayed genes belong to this local TCS context.
Neighborhood span2 728-4 500 nt1 773 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 728 nt4 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS09800GCF_027692425#PG422_RS09800
HKClassicCurrent focus
2 728-3 804 nt · Reverse (-)
PG422_RS09805GCF_027692425#PG422_RS09805
RROmpR
3 829-4 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS09280Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2762458
Simplified PFAM architecture for HKOC_2762458
PFAM domain coverage: 172 / 358 aa (48.0%)
1 aa358 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-197] | HATPase_c[244-351]
- Domain count: 2
- Matched identifier: HKOC_2762458
- Positioned domains: HisKA 134-197 ; HATPase_c 244-351
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS09280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key