1 HAMP#1
189-257 aa · 69 aa · 14.1% of protein
Raw token
HAMP:189:0.00000164:257:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS00375
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692425
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS00375Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 488 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.5% of protein
Raw token
HisKA:262:0.0000000000000157:327:66:643 HATPase_c#3
375-485 aa · 111 aa · 22.7% of protein
Raw token
HATPase_c:375:1.11e-30:485:111:109- Raw architecture: HAMP:189:0.00000164:257:69:69#HisKA:262:0.0000000000000157:327:66:64#HATPase_c:375:1.11e-30:485:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69333-71442Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000001.1::G00001Context members
PG422_RS00375PG422_RS00380
Partner locus tags
PG422_RS00375PG422_RS00380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270196600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS00375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000001.1Sequence record reported by the local genomic context database.
Genomic interval69 333-70 799 nt1 467 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 333-71 442 ntGCF_027692425::NZ_JAQEYW010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span69 333-71 442 nt2 110 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 333 nt71 442 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS00375GCF_027692425#PG422_RS00375
HKClassicCurrent focus
69 333-70 799 nt · Reverse (-)
PG422_RS00380GCF_027692425#PG422_RS00380
RROmpR
70 756-71 442 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_963559075#R5012_RS09865Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1526973
Simplified PFAM architecture for HKOC_1526973
PFAM domain coverage: 177 / 492 aa (36.0%)
1 aa492 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[266-331] | HATPase_c[379-489]
- Domain count: 2
- Matched identifier: HKOC_1526973
- Positioned domains: HisKA 266-331 ; HATPase_c 379-489
Cluster members and taxonomy
Representative gene: GCF_963559075#R5012_RS09865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key