1 Response_reg#1
13-125 aa · 113 aa · 85.6% of protein
Raw token
Response_reg:13:0.0000000000101:125:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGX63_RS06380
Response regulator, CheY family
Bifidobacterium pseudocatenulatum · GCF_027683465
ClassRRTypeCheYLength132 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027683465#PGX63_RS06380Stable P2CS identifier used across views.
GenomeGCF_027683465Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length132 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 132 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa132 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:13:0.0000000000101:125:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027683465::NZ_JAQCXT010000008.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22483-22881Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027683465::NZ_JAQCXT010000008.1::G00015Context members
PGX63_RS06380
Partner locus tags
PGX63_RS06380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181972859.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGX63_RS06380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCXT010000008.1Sequence record reported by the local genomic context database.
Genomic interval22 483-22 881 nt399 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 483-22 881 ntGCF_027683465::NZ_JAQCXT010000008.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027683465::NZ_JAQCXT010000008.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCXT010000008.1All displayed genes belong to this local TCS context.
Neighborhood span22 483-22 881 nt399 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 483 nt22 881 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGX63_RS06380GCF_027683465#PGX63_RS06380
RRCheYCurrent focus
22 483-22 881 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436315#DXD71_RS08575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055489
Simplified PFAM architecture for RROC_1055489
PFAM domain coverage: 163 / 234 aa (69.7%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-120] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1055489
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; GerE 170-223 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_003436315#DXD71_RS08575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_027683465
AssemblyASM2768346v1 · Scaffoldhaploid
Genome composition2 305 542 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key