1 Response_reg#1
9-133 aa · 125 aa · 50.2% of protein
Raw token
Response_reg:9:2.32e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGU75_RS00030
Response regulator NarL family
Bifidobacterium adolescentis · GCF_027675045
ClassRRTypeNarLLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027675045#PGU75_RS00030Stable P2CS identifier used across views.
GenomeGCF_027675045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 249 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
186-243 aa · 58 aa · 23.3% of protein
Raw token
HTH_LUXR:186:2.77e-23:243:58:58- Raw architecture: Response_reg:9:2.32e-28:133:125:111#HTH_LUXR:186:2.77e-23:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027675045::NZ_JAQDTU010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4841-8276Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027675045::NZ_JAQDTU010000001.1::G00001Context members
PGU75_RS00025PGU75_RS00030
Partner locus tags
PGU75_RS00025PGU75_RS00030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039774950.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5BFT3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5BFT3_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGU75_RS00030Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDTU010000001.1Sequence record reported by the local genomic context database.
Genomic interval7 527-8 276 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 841-8 276 ntGCF_027675045::NZ_JAQDTU010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027675045::NZ_JAQDTU010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDTU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 841-8 276 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 841 nt8 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGU75_RS00025GCF_027675045#PGU75_RS00025
HKClassic
4 841-7 450 nt · Forward (+)
PGU75_RS00030GCF_027675045#PGU75_RS00030
RRNarLCurrent focus
7 527-8 276 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000817995#BBMN23_RS03235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0732847
Simplified PFAM architecture for RROC_0732847
PFAM domain coverage: 180 / 249 aa (72.3%)
1 aa249 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[188-243]
- Domain count: 2
- Matched identifier: RROC_0732847
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 188-243 ; GerE 188-243
Cluster members and taxonomy
Representative gene: GCF_000817995#BBMN23_RS03235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_027675045
AssemblyASM2767504v1 · Scaffoldhaploid
Genome composition2 365 900 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key