1 Response_reg#1
5-116 aa · 112 aa · 21.2% of protein
Raw token
Response_reg:5:3.12e-27:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGT68_RS10755
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_027671305
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027671305#PGT68_RS10755Stable P2CS identifier used across views.
GenomeGCF_027671305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 529 aa (27.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
495-526 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:495:0.0000000409:526:32:42- Raw architecture: Response_reg:5:3.12e-27:116:112:111#HTH_AraC:495:0.0000000409:526:32:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027671305::NZ_JAQEAM010000015.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53865-57205Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027671305::NZ_JAQEAM010000015.1::G00011Context members
PGT68_RS10755PGT68_RS10760
Partner locus tags
PGT68_RS10755PGT68_RS10760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270492511.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGT68_RS10755Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEAM010000015.1Sequence record reported by the local genomic context database.
Genomic interval53 865-55 454 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 865-57 205 ntGCF_027671305::NZ_JAQEAM010000015.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027671305::NZ_JAQEAM010000015.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEAM010000015.1All displayed genes belong to this local TCS context.
Neighborhood span53 865-57 205 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 865 nt57 205 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGT68_RS10755GCF_027671305#PGT68_RS10755
RRunclassifiedCurrent focus
53 865-55 454 nt · Reverse (-)
PGT68_RS10760GCF_027671305#PGT68_RS10760
HKClassic
55 445-57 205 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027671305#PGT68_RS10755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113806
Simplified PFAM architecture for RROC_0113806
PFAM domain coverage: 190 / 529 aa (35.9%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[450-527]
- Domain count: 2
- Matched identifier: RROC_0113806
- Positioned domains: Response_reg 5-116 ; HTH_18 450-527
Cluster members and taxonomy
Representative gene: GCF_027671305#PGT68_RS10755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_027671305
AssemblyASM2767130v1 · Scaffoldhaploid
Genome composition3 754 787 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 102 · HK 50 · RR 49CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key