1 GGDEF#1
149-294 aa · 146 aa · 21.3% of protein
Raw token
GGDEF:149:9.68e-35:294:158:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGT68_RS07670
Response regulator, RpfG family
Fusicatenibacter saccharivorans · GCF_027671305
ClassRRTypeRpfGLength687 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027671305#PGT68_RS07670Stable P2CS identifier used across views.
GenomeGCF_027671305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length687 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage359 / 687 aa (52.3%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa687 aa
Domain-by-domain annotation3 items
2 Response_reg#2
321-434 aa · 114 aa · 16.6% of protein
Raw token
Response_reg:321:7.27e-26:434:115:1113 HD#3
516-614 aa · 99 aa · 14.4% of protein
Raw token
HD:516:0.000000000000434:614:99:110- Raw architecture: GGDEF:149:9.68e-35:294:158:160#Response_reg:321:7.27e-26:434:115:111#HD:516:0.000000000000434:614:99:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027671305::NZ_JAQEAM010000009.1::G00064
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30179-32242Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027671305::NZ_JAQEAM010000009.1::G00064Context members
PGT68_RS07670
Partner locus tags
PGT68_RS07670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270492378.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGT68_RS07670Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEAM010000009.1Sequence record reported by the local genomic context database.
Genomic interval30 179-32 242 nt2 064 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 179-32 242 ntGCF_027671305::NZ_JAQEAM010000009.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027671305::NZ_JAQEAM010000009.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEAM010000009.1All displayed genes belong to this local TCS context.
Neighborhood span30 179-32 242 nt2 064 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 179 nt32 242 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGT68_RS07670GCF_027671305#PGT68_RS07670
RRRpfGCurrent focus
30 179-32 242 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027671305#PGT68_RS07670The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0032789
Simplified PFAM architecture for RROC_0032789
PFAM domain coverage: 391 / 687 aa (56.9%)
1 aa687 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[149-293] | Response_reg[321-433] | HD_5[501-633]
- Domain count: 3
- Matched identifier: RROC_0032789
- Positioned domains: GGDEF 149-293 ; Response_reg 321-433 ; HD_5 501-633
Cluster members and taxonomy
Representative gene: GCF_027671305#PGT68_RS07670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_027671305
AssemblyASM2767130v1 · Scaffoldhaploid
Genome composition3 754 787 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 102 · HK 50 · RR 49CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key